The same problem occurs with an Ubuntu machine running on AWS. Turns off the key to the solution, switches from devicemapper to the aufs backend.
First, run the following command to find out which back-up for storage is currently in use:
docker info | grep Storage
If he says devicemapper , you probably found the reason for the slowness.
Here, for example, is prodecure for switching to the aufs backend in Ubuntu, taken from here :
sudo apt-get install -y -q linux-image-extra-$(uname -r)sudo service docker restart
Please note that you will have to rebuild all existing images / containers as they will be deleted when you switch to aufs.
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