#include <Rcpp11> file error not found
I am trying to use the Rcpp11 package in r from its source through:
devtools::install_github("Rcpp11/Rcpp11") I read here: http://blog.r-enthusiasts.com/2014/05/27/disambiguating-rcpp11-and-rcpp/
that I can use include <Rcpp11> + using namespace Rcpp11 at the head of my .cpp file, but I get this error when searching:
egfile.cpp:1:10: fatal error: 'Rcpp11' file not found #include <Rcpp11> ^ 1 error generated. where egfile.cpp :
#include <Rcpp11> using namespace Rcpp11; // Below is a simple example of exporting a C++ function to R. You can // source this function into an R session using the Rcpp::sourceCpp // function (or via the Source button on the editor toolbar) // For more on using Rcpp click the Help button on the editor toolbar // [[Rcpp::export]] int timesTwo(int x) { return x * 2; } Any help with this? or should I refer to the method // [[Rcpp::plugins(cpp11)]] ?
Update: using attributes::sourceCpp()
devtools::install_github("Rcpp11/attributes") then reboot from a clean session:
library(Rcpp11) attributes::sourceCpp("egfile.cpp") # in home directory. I get:
In file included from file2c1e303c4ed6.cpp:1: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp11:4: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp.h:238: /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:54:1: error: no member named 'Rf_pnorm' in the global namespace RCPP_DPQ__2(norm,double mean = 0, double sd = 1, mean, sd ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:30:51: note: expanded from macro 'RCPP_DPQ__2' #define RCPP_DPQ__2(__NAME__,PAR1,PAR2,VAL1,VAL2) RCPP_DPQ(__NAME__,RCPP_ECHO(RCPP_CONCAT(PAR1,PAR2)), RCPP_ECHO(RCPP_CONCAT(VAL1,VAL2)) ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:14:31: note: expanded from macro 'RCPP_DPQ' decltype(sapply( x, ::Rf_p##__NAME__, VAL, lower, log )) \ ~~^ <scratch space>:208:1: note: expanded from here Rf_pnorm ^ In file included from file2c1e303c4ed6.cpp:1: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp11:4: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp.h:238: /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:54:1: error: no member named 'Rf_pnorm' in the global namespace RCPP_DPQ__2(norm,double mean = 0, double sd = 1, mean, sd ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:30:51: note: expanded from macro 'RCPP_DPQ__2' #define RCPP_DPQ__2(__NAME__,PAR1,PAR2,VAL1,VAL2) RCPP_DPQ(__NAME__,RCPP_ECHO(RCPP_CONCAT(PAR1,PAR2)), RCPP_ECHO(RCPP_CONCAT(VAL1,VAL2)) ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:16:29: note: expanded from macro 'RCPP_DPQ' return sapply( x, ::Rf_p##__NAME__, VAL, lower, log ) ; \ ~~^ <scratch space>:208:1: note: expanded from here Rf_pnorm ^ In file included from file2c1e303c4ed6.cpp:1: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp11:4: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp.h:238: /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:54:1: error: no member named 'Rf_qnorm' in the global namespace RCPP_DPQ__2(norm,double mean = 0, double sd = 1, mean, sd ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:30:51: note: expanded from macro 'RCPP_DPQ__2' #define RCPP_DPQ__2(__NAME__,PAR1,PAR2,VAL1,VAL2) RCPP_DPQ(__NAME__,RCPP_ECHO(RCPP_CONCAT(PAR1,PAR2)), RCPP_ECHO(RCPP_CONCAT(VAL1,VAL2)) ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:20:31: note: expanded from macro 'RCPP_DPQ' decltype(sapply( x, ::Rf_q##__NAME__, VAL, lower, log )) \ ~~^ <scratch space>:208:1: note: expanded from here Rf_qnorm ^ In file included from file2c1e303c4ed6.cpp:1: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp11:4: In file included from /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp.h:238: /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:54:1: error: no member named 'Rf_qnorm' in the global namespace RCPP_DPQ__2(norm,double mean = 0, double sd = 1, mean, sd ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:30:51: note: expanded from macro 'RCPP_DPQ__2' #define RCPP_DPQ__2(__NAME__,PAR1,PAR2,VAL1,VAL2) RCPP_DPQ(__NAME__,RCPP_ECHO(RCPP_CONCAT(PAR1,PAR2)), RCPP_ECHO(RCPP_CONCAT(VAL1,VAL2)) ) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp11/include/Rcpp/stats/stats.h:22:29: note: expanded from macro 'RCPP_DPQ' return sapply( x, ::Rf_q##__NAME__, VAL, lower, log ) ; \ ~~^ <scratch space>:208:1: note: expanded from here Rf_qnorm ^ 4 errors generated. make: *** [file2c1e303c4ed6.o] Error 1 Error in dyn.load(basename(dynlib)) : unable to load shared object '/private/var/folders/77/9nq5hj5d37b1rhbzdt0z3twr0000gn/T/RtmpcjWOsg/file2c1e303c4ed6.so': dlopen(/private/var/folders/77/9nq5hj5d37b1rhbzdt0z3twr0000gn/T/RtmpcjWOsg/file2c1e303c4ed6.so, 6): image not found In addition: Warning message: running command '/Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB 'file2c1e303c4ed6.cpp'' had status 1 Presumably, you are trying to compile it from R Studio, which will use Rcpp::sourceCpp . To create glue code for Rcpp11, you will need the implementation of sourceCpp from the attributes package. attributes available from github:
devtools::install_github("Rcpp11/attributes") Then use this version to compile your file, i.e.
attributes::sourceCpp( "yourfile.cpp" ) Compiling an Rcpp11 file using Rstudio ui is something that we have not yet considered, but something that we have identified as necessary here