Additional information on the topic:
As an OP, I also had the same problem, class files were not created because bin subfolders were not deleted. I have a workspace on a drive connected to the network (at work) with the offline function, the files are stored locally and synchronized when I am connected to the network or connected to my work. Due to synchronization problems, Eclipse cannot remove bin-subfolders, and as a result, class files are not created. Cleaning does not fix it, but the error messages in the “Problems” items are in the right direction.
My solution was to eliminate all files and folders with "syncproblems" (in the center of synchronization for my windows are "offline files"). I am on a machine with Windows 10, and the standalone function is (I think) a solution for the microsoft network. My first post, so I'm sorry if it is inadequate in any way. Hope this helps someone
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