Interestingly, instead of l and r, you can try p {width} for your alignment. This works well for me:
\begin{tabular}{p{0.45\textwidth} p{0.5\textwidth}}
$\phi$$_{\mathrm{CJ}}$^* = \Sum$_{\mathrm{SV}}$ $\psi$$_{\mathrm{CSJV}}$ = P(S) P(S \& V,C,S,J) & (no summation on S or V which are in evidence.) \\
\end{tabular}
p {width} , , l r - (, ) , -.
P (S) P (S V, C, S, J), \& , ...
, eQmakebox LaTeX/Tables Wikibook , , , - , \tabular... (LINK).