I am writing a genomic browser designed primarily to view the history of chromosomal rearrangements. Right now, the project is a series of demo demos written using Processing . At this point, if I do not make any drastic changes, the final application will be a gui web applet consisting of swing components that open PApplets to actually show permutations.
My question is: should I give up processing and switch to pure Swing / AWT? This is my first big java project. I am building in an eclipse, but I can also use netbeans. If I could embed PApplet objects inside a JFrame, for example, that would make my day.
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