Is there a better way to code this sqlQuery in R?

Question

I am writing an R script to get some database data and then do things with it using the RODBC package. Currently, all my sqlQuery commands are one long string;

stsample<-sqlQuery(odcon, paste"select * from bob.DESIGNSAMPLE T1, bob.DESIGNSUBJECTGROUP T2, bob.DESIGNEVENT T3, bob.CONFIGSAMPLETYPES T4 WHERE T1.SUBJECTGROUPID = T2.SUBJECTGROUPID AND T1.TREATMENTEVENTID = T3.TREATMENTEVENTID AND T1.SAMPLETYPEKEY = T4.SAMPLETYPEKEY AND T1.STUDYID = T2.STUDYID AND T1.STUDYID = T3.STUDYID AND T1.STUDYID = ", chstudid, sep=""))
head(stsample)

which looks ugly and hard to read / update. I tried to set them multi-line, but then new line characters interfere, at the moment I am best off using a lot of paste;

stsample<-sqlQuery(odcon,
    paste(
        "select ",
            "* ", 
        "from ", 
            "BOB.DESIGNSAMPLE T1, ",
            "BOB.DESIGNSUBJECTGROUP T2, ",
            "BOB.DESIGNEVENT T3, ",
            "BOB.CONFIGSAMPLETYPES T4 ",
        "WHERE ",
            "T1.SUBJECTGROUPID = T2.SUBJECTGROUPID ",
            "AND T1.TREATMENTEVENTID = T3.TREATMENTEVENTID ",
            "AND T1.SAMPLETYPEKEY = T4.SAMPLETYPEKEY ",
            "AND T1.STUDYID = T2.STUDYID ",
            "AND T1.STUDYID = T3.STUDYID ",
            "AND T1.STUDYID = ",chstudid,
        sep="")
    )
head(stsample)

But I don’t like it when you need to put quotation marks around each line and correct the spaces correctly. Is there a better way?

Answer 1

I would use something like this:

stsample<-sqlQuery(odcon,
    paste("
####DATASET CONSTRUCTION QUERY #########
    select 
    *  
    from 
    BOB.DESIGNSAMPLE T1, 
    BOB.DESIGNSUBJECTGROUP T2, 
    BOB.DESIGNEVENT T3, 
    BOB.CONFIGSAMPLETYPES T4 
    WHERE 
    T1.SUBJECTGROUPID = T2.SUBJECTGROUPID 
    AND T1.TREATMENTEVENTID = T3.TREATMENTEVENTID 
    AND T1.SAMPLETYPEKEY = T4.SAMPLETYPEKEY 
    AND T1.STUDYID = T2.STUDYID 
    AND T1.STUDYID = T3.STUDYID 
    AND T1.STUDYID = 
###################################   
    ", as.character(chstudid), sep="")
    )

Answer 2

gsub ( "\n", "," long multiline select string") ?

Answer 3

This is a really old question, but thought it might be useful to someone.

One thing I found useful is the GetoptLong package , which provides the qq () function. I think it is inspired by Perl, but essentially it provides a way to create a multi-line string with simple interpolation of variables. For instance:

library(GetoptLong)

tableName <- "myTable"
id <- 42

sqlQuery(odcon, qq("
    SELECT * FROM @{tableName}
    WHERE id = @{id}
    LIMIT 1
")