In windows, I assume that you can access the registry using the method described here (running the reg command).
Another approach is the JNI registry interface .
I am not sure if this is the easiest way. You might just try loading the appropriate driver classes, and if that fails to load the regular Windows.msi or .exe installer to complete the actual driver installation. You can usually configure the installer to silently without user interaction, if absolutely necessary, to hide it from the user. However, this may be due to the fact that the new device driver will probably need to restart Windows.
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