TL; DR;
I have a shell script that works fine when launched from the command line, but not when called from a PHP script (access via the Internet).
In both cases, the calling user www-data.
Line error:
openssl genrsa -des3 -out certs/$PCODE.key -passout env:PASSPHRASE 2048
Why is this happening? How to debug it?
Full story
I have the following script, which is a slightly modified version of this gist, for creating self-signed SSL certificates.
When I run it from a terminal like www-data, it works fine and generates key files, CSR and SSL certificate file. But when I call a script from a PHP script, it throws an error and the files are not generated. What causes a failure? How can I debug this?
From the terminal:
 me@machine$ sudo su www-data  
 www-data@machine$ ./gencert.sh acme  
 www-data will generate an SSL cert for acme.dev  
 Command after line 32 executed oK  
 Passphrase expoted as I7gOnWxWd0hOk38Zu ... FbxL3K3Rzlv  
 Generating RSA private key, 2048 bit long modulus  
 ..............................................+++  
 .................+++  
 e is 65537 (0x10001)  
 Command after line 49 executed oK  
 Command after line 54 executed oK  
 Command after line 65 executed oK  
 writing RSA key  
 Command after line 69 executed oK  
 Signature ok  
 subject=/C=IR/ST=Alborz/.../emailAddress=noreply@acme.dev  
 Getting Private key  
 Command after line 74 executed oK
Result Files:
- certificates /acme.key.org
- /acme.key
- /acme.csr
- /acme.crt
PHP:
$r = `/var/www/testbench/pm/shell/gencert.sh acme`;
echo $r;
, :
www-data will generate an SSL cert for acme.dev
Command after line 32 executed oK
Passphrase expoted as 1Fd1seZoe2XF ... oSmQFJdVpdwOeTo2CK5VjLxp
Error. Return value = 1 after line 49 
, 1, :
openssl genrsa -des3 -out certs/$PCODE.key -passout env:PASSPHRASE 2048
script:
#!/bin/bash
PCODE="$1"
if [ -z "$PCODE" ]; then
  echo "Usage: $(basename $0) <PCODE>"
  exit 11
fi
THE_USER="$(whoami)"
echo "$THE_USER will generate an SSL cert for $PCODE.dev"
fail_if_error() {
  [ $1 != 0 ] && {
    echo -n "Error. Return value = $1 after line $LASTLINE"
    unset PASSPHRASE
    exit 10
  }
  echo "Command after line $LASTLINE executed oK"
}
LASTLINE="${LINENO}"
export PASSPHRASE=$(head -c 500 /dev/urandom | tr -dc a-z0-9A-Z | head -c 128; echo)
fail_if_error $?
echo -n "Passphrase expoted as "
printenv PASSPHRASE
subj="
C=IR
ST=Alborz
O=ACME
localityName=Karaj
commonName=*.$PCODE.dev
organizationalUnitName=WebAdmin
emailAddress=noreply@$PCODE.dev
"
LASTLINE="${LINENO}"
openssl genrsa -des3 -out certs/$PCODE.key -passout env:PASSPHRASE 2048
fail_if_error $?
LASTLINE="${LINENO}"
openssl req \
    -new \
    -batch \
    -subj "$(echo -n "$subj" | tr "\n" "/")" \
    -key certs/$PCODE.key \
    -out certs/$PCODE.csr \
    -passin env:PASSPHRASE
fail_if_error $?
LASTLINE="${LINENO}"
cp certs/$PCODE.key certs/$PCODE.key.org
fail_if_error $?
LASTLINE="${LINENO}"
openssl rsa -in certs/$PCODE.key.org -out certs/$PCODE.key -passin env:PASSPHRASE
fail_if_error $?
LASTLINE="${LINENO}"
openssl x509 -req -days 3650 -in certs/$PCODE.csr -signkey certs/$PCODE.key -out certs/$PCODE.crt
fail_if_error $?