So, you are not running the Shiny application on Apache, Shiny Apps should be running on the Shiny server. You have several options for deploying the Shiny application on your site. The easiest way is to publish your application on shinyapps.io, and then add an IFrame to your site, which displays the deployed Shiny application.
Since you asked how to run the Shiny application on Apache, I assume that you want to deploy your own Shiny Server, which can be deployed on the same computer as your Apache server or on another machine. Instructions for this can be found here: https://www.rstudio.com/products/shiny/download-server/
, . r Shiny Server. .: http://docs.rstudio.com/shiny-server/#host-a-directory-of-applications-1
, , Shiny Server, Apache (Nginx -), - Shiny Server. , : https://support.rstudio.com/hc/en-us/articles/213733868-Running-Shiny-Server-with-a-Proxy
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