I just came up with another solution:
diag(aggregate(value~group, df, function(x) x[inds])[,-1])
#[1] 1 3 NA
Benchmarking
library(microbenchmark)
library(data.table)
df <- structure(list(group = structure(c(1L, 1L, 1L, 2L, 2L, 2L, 3L,
3L), .Label = c("A", "B", "C"), class = "factor"), value = c(8L,
1L, 7L, 3L, 2L, 6L, 4L, 5L)), .Names = c("group", "value"), class = "data.frame", row.names = c(NA,
-8L))
inds <- c(2,1,NA)
f_Imo <- function(df) as.vector(mapply("[", with(df, split(value, group)), inds))
f_Osssan <- function(df) {lvls = levels(df$group);sapply(1:length(lvls),function(x) df$value[df$group==lvls[x]][inds[x]])}
f_User2321 <- function(df) unlist(mapply(function(x, y) subset(df, group == x, value)[y,] ,levels(df$group), inds))
f_dww <- function(df) setDT(df)[, .SD[inds[.GRP], value], by=group][,V1]
f_m0h3n <- function(df) diag(aggregate(value~group, df, function(x) x[inds])[,-1])
all.equal(f_Imo(df), f_Osssan(df), f_User2321(df), f_dww(df), f_m0h3n(df))
# [1] TRUE
microbenchmark(f_Imo(df), f_Osssan(df), f_m0h3n(df), f_User2321(df), f_dww(df))
# Unit: microseconds
# expr min lq mean median uq max neval
# f_Imo(df) 71.004 85.1180 91.52996 91.748 96.8810 121.048 100
# f_Osssan(df) 252.788 276.5265 318.70529 287.648 301.5495 2651.492 100
# f_m0h3n(df) 1422.627 1555.4365 1643.47184 1618.740 1670.7095 4729.827 100
# f_User2321(df) 2889.738 3000.3055 3148.44916 3037.945 3118.7860 6013.442 100
# f_dww(df) 2960.740 3086.2790 3206.02147 3143.381 3250.9545 5976.229 100