How to colorize the matplotlib scatterplot using a continuous value [`seaborn` color palettes?]

Question

I have a scatter chart, and I want to colorize it based on a different value (naively assigned np.random.random()in this case).

Is there a way to use seabornto display a continuous value (not directly related to the data that is displayed) for each point for the value along the continuous gradient in seaborn?

Here is my code for generating data:

import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from sklearn.datasets import load_iris
from sklearn.preprocessing import StandardScaler
from sklearn import decomposition
import seaborn as sns; sns.set_style("whitegrid", {'axes.grid' : False})

%matplotlib inline
np.random.seed(0)

# Iris dataset
DF_data = pd.DataFrame(load_iris().data, 
                       index = ["iris_%d" % i for i in range(load_iris().data.shape[0])],
                       columns = load_iris().feature_names)

Se_targets = pd.Series(load_iris().target, 
                       index = ["iris_%d" % i for i in range(load_iris().data.shape[0])], 
                       name = "Species")

# Scaling mean = 0, var = 1
DF_standard = pd.DataFrame(StandardScaler().fit_transform(DF_data), 
                           index = DF_data.index,
                           columns = DF_data.columns)

# Sklearn for Principal Componenet Analysis
# Dims
m = DF_standard.shape[1]
K = 2

# PCA (How I tend to set it up)
Mod_PCA = decomposition.PCA(n_components=m)
DF_PCA = pd.DataFrame(Mod_PCA.fit_transform(DF_standard), 
                      columns=["PC%d" % k for k in range(1,m + 1)]).iloc[:,:K]
# Plot
fig, ax = plt.subplots()
ax.scatter(x=DF_PCA["PC1"], y=DF_PCA["PC2"], color="k")
ax.set_title("No Coloring")

Ideally, I wanted to do something like this:

# Color classes
cmap = {obsv_id:np.random.random() for obsv_id in DF_PCA.index}

# Plot



fig, ax = plt.subplots()
ax.scatter(x=DF_PCA["PC1"], y=DF_PCA["PC2"], color=[cmap[obsv_id] for obsv_id in DF_PCA.index])
ax.set_title("With Coloring")

# ValueError: to_rgba: Invalid rgba arg "0.2965562650640299"
# to_rgb: Invalid rgb arg "0.2965562650640299"
# cannot convert argument to rgb sequence

but he did not like the continuous meaning.

I want to use a color palette, for example:

sns.palplot(sns.cubehelix_palette(8))

I also tried to do something like below, but b / c does not make sense, it does not know what values ​​I used in my dictionary cmapabove:

ax.scatter(x=DF_PCA["PC1"], y=DF_PCA["PC2"],cmap=sns.cubehelix_palette(as_cmap=True)

Answer 1

import numpy as np
import seaborn as sns
import matplotlib.pyplot as plt

x, y, z = np.random.rand(3, 100)
cmap = sns.cubehelix_palette(as_cmap=True)

f, ax = plt.subplots()
points = ax.scatter(x, y, c=z, s=50, cmap=cmap)
f.colorbar(points)

Answer 2

from matplotlib.cm import ScalarMappable
from matplotlib.colors import Normalize


cmap = {obsv_id:np.random.random() for obsv_id in DF_PCA.index}
sm = ScalarMappable(norm=Normalize(vmin=min(list(cmap.values())), vmax=max(list(cmap.values()))), cmap=sns.cubehelix_palette(as_cmap=True))

# Plot
fig, ax = plt.subplots()
ax.scatter(x=DF_PCA["PC1"], y=DF_PCA["PC2"], color=[sm.to_rgba(cmap[obsv_id]) for obsv_id in DF_PCA.index])
ax.set_title("With Coloring")