If you do not specify a qualified assembly name, Type.GetTypeit only works for types mscorlib. In your example, you defined AQN only for an argument of a built-in type.
var type = Type.GetType("MyProject.MyGenericType`1[[MyProject.MySimpleType, MyProject, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null]]");
var type = Type.GetType("MyProject.MyGenericType`1[[MyProject.MySimpleType, MyProject, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null]], MyProject, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null");
Your source line will work if you use Assembly.GetTypeinstead Type.GetType:
var myAsm = typeof(MyGenericType<>).Assembly;
var type = myAsm.GetType("MyProject.MyGenericType`1[[MyProject.MySimpleType, MyProject, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null]]");
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