How about writing a simple method that maps source cells to destination and then averages?
public static boolean matrixReduce(double[][] dst, double[][] src) {
double dstMaxX = dst.length - 1, dstMaxY = dst[0].length - 1;
double srcMaxX = src.length - 1, srcMaxY = src[0].length - 1;
int count[][] = new int[dst.length][dst[0].length];
for (int x = 0; x < src.length; x++) {
for (int y = 0; y < src[0].length; y++) {
int xx = (int) Math.round((double) x * dstMaxX / srcMaxX);
int yy = (int) Math.round((double) y * dstMaxY / srcMaxY);
dst[xx][yy] += src[x][y];
count[xx][yy]++;
}
}
for (int x = 0; x < dst.length; x++) {
for (int y = 0; y < dst[0].length; y++) {
dst[x][y] /= count[x][y];
}
}
return true;
}
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