You will have to manually go over and change all the paths in the include strings to absolute paths. I had the same problem and fixed it.
So, for example, in jmagick.c, you will have a line saying: include <magick/api.h> or include "magick/api.h"
You will have to change this to the absolute path where the api.h file is located. Mine was in C: /SomeFolders/Android-ImageMagick-master/Android-ImageMagick-master/ndk-modules/ImageMagick-6.7.3-0/magick, so I changed my included directives to
include <C:/SomeFolders/Android-ImageMagick-master/Android-ImageMagick-master/ndk-modules/ImageMagick-6.7.3-0/magick/api.h>
And you will have to do this in all the files that give you this error "There is no such file or directory"
As soon as I did this, he asked for the ft2build.h header file, which is actually nowhere on my disk. Therefore, I do not know what to do with this: (
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