IIS is not used simply for ASP.Net, it can serve PHP, for example .. Since the type of application and the pool varies, it is not created automatically and is not tied to the ASP.Net engine.
If you can clarify a little more of what you are trying to do, perhaps we can help further. For example, if you want to point the root application to another folder and this application or create another website, IIS allows you to do any of this ... you just need to update the question, with which version of IIS, how are the instructions between them.
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