I think it would be easier to just follow the @yihui example that was used in his bookdown krantz example :
Add the following files, possibly to the /latex subfolder:
preamble.tex with the latex \frontmatter at the end,after_body.tex using the latex \backmatter ,
Then, before your first actual main body, simply add the \mainmatter (only in latex), say, to your index.Rmd (whatever your *.Rmd , usually index.Rmd ).
Then, to modify your _output.yml as follows:
bookdown::pdf_book: includes: in_header: latex/preamble.tex after_body: latex/after_body.tex
This alternates the correct \frontmatter , \mainmatter and \backmatter in your Latin pandoc-ed book. This will be followed by most style files to make sure that Arabic numbering starts only inside the main question.
This is also described in the publication of the bookdown chapter of the book.
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