Now you can create Caffe for Python3, and I'm pretty sure it was possible on December 16th when the question was asked.
To do this, you need to remove the comments in Makefile.config using Python3:
# Uncomment to use Python 3 (default is Python 2)
But therefore you only have caffe in python3 OR python2, due to the way you install caffe (with PYTHON_PATH, not so good).
To get around this, you can do this trick in ~ / .bashrc:
alias python2="export PYTHONPATH=$PYTHONPATH:/home/undead/reps/caffe_py2/python && python2" alias python3="export PYTHONPATH=$PYTHONPATH:/home/undead/reps/caffe_py3/python && python3" alias python="export PYTHONPATH=$PYTHONPATH:/home/undead/reps/caffe_py2/python && python2"
Therefore, both will work.
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