I also ran into the same problem and quickly found a solution to this problem.
<script src="/js/lib/bootstrap.min.js"></script> <script>var bootstrapTooltip = jQuery.fn.tooltip;</script> <script src="/js/lib/jquery-ui.min.js"></script> <script>jQuery.fn.tooltip = bootstrapTooltip;</script>
This will override the jquery-ui hint and will use the boot prompt.
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