Two things can be distinguished here: what printprints and what returns.
The method printfor a numeric vector will print the contents of the vector on the screen. This is the first part of your result:
[1] 0.8966972 0.3721239 0.9082078
[1] 0.2655087 0.5728534 0.2016819
Here, the first row is the printed output for row 1 of your matrix, and the second row is the printed output for row 2.
print , ; . ( ) . apply, . apply :
[,1] [,2]
[1,] 0.8966972 0.2655087
[2,] 0.3721239 0.5728534
[3,] 0.9082078 0.2016819
? , apply. ?apply:
FUN n, apply c (n, dim (X) [MARGIN]), n > 1. n 1, apply , MARGIN 1 dim (X) [MARGIN] .